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The former Brazilian leader has been detained after authorities found he posed a serious risk of fleeing while under home confinement.
The ex-president was found guilty of planning a government overthrow in September and given more than 27 years in incarceration, but he was staying under confinement pending legal challenges.
High Court Judge Justice Moraes said the action to imprison the elderly politician was a preventative measure after fresh information came to light.
This involved seeking to disable his tracking device and a invitation to a public vigil that could enable a chance to flee".
In a document approving the custody, the magistrate said information from the unit overseeing Bolsonaro's house arrest suggested the former leader's plan to remove the surveillance device to ensure success in his flight.
This, it said, would be assisted by the disorder caused by the protest called by his child.
His offspring, Flávio, who works as a congressional representative, called for a assembly of his followers near his father's house to take place on Saturday night.
The senator wrote on digital networks on Friday: Will you battle for your country, or see it all from your smartphone there on your couch? I call on you to struggle with us."
He said the vigil would be so followers could seek divine intervention for his well-being and for the reestablishment of democratic governance in our nation."
Part of the magistrate's ruling was the potential of his transfer to embassies near the home, considering that the probes revealed a background of arranging to request asylum through a consular facility", a declaration said.
The court filing underscores that the US embassy in the federal district, Brazil's capital, is located around approximately 13 kilometers from his dwelling.
His judicial problems have generated frustration from fellow right-wing populist United States President President Trump, prompting him to implement a half-rate duty on goods coming from Brazil.
The former president is being kept in a federal law enforcement building in the capital and will undergo a detention review on the next day.
It was only on Friday that the ex-leader's attorneys asked the Top Court to permit him to serve his whole jail sentence under house arrest, with tracking devices.
They also asked that Bolsonaro be allowed to leave his home for medical treatment, saying he demanded frequent medical attention for pulmonary infections and other ailments.
The former president was convicted of leading a scheme aimed at keeping him in power after he failed to win the 2022 election to his left-wing rival, Lula.
High Court judges said that he was aware of a plot which involved plans to murder his opponent and his vice-presidential running mate, Alckmin, and to arrest and execute Justice Moraes - the Supreme Court justice who has been managing Bolsonaro's trial.
The conspiracy was thwarted because it couldn't obtain the endorsement of the army and air force commanders. His successor was took office without problem on January 1st, 2023.
But a following week, on 8 January, many Bolsonaro supporters stormed and vandalised official structures in the national capital, BrasĂlia.
The security forces intervened and around 1,500 people were taken into custody.
The justices found that the rioters had been encouraged by the former president whose plan, they said, was for the country's army to take action, bring back stability and reinstate his authority.
At the moment, his attorneys called the 27 years and three months sentence extremely harsh.
He was also barred from running for public office until the year 2060 - eight years later after the conclusion of his imprisonment.
The one-time head of state called the court case a "witch hunt and said it was aimed at blocking him competing in the 2026 national vote.
A tech strategist with over a decade of experience in digital transformation and innovation, passionate about simplifying complex tech concepts.